rs6046426 chr20:19891111 A>G
- Sequence
ttttctgggcaagaagatcctgga[A/G]gaatgagttacgttatgttgacac
- ASB in cell types
- LNCaP (prostate carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.29 | -0.06 | 1.55 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.36 | -0.06 | 1.37 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid