rs6047684 chr20:21873126 G>A

Sequence
tggtattattttacatttctataa[G/A]caatagatgagggttcttgttcct
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.06 0.97 1.004.1·10-4 1.37 4.52 Concordant
Items per page:
1 – 1 of 1

Motif analysis

FOXA1_HUMAN Concordant
FOXA1_HUMAN pic

Genetic associations

GRASP adiponectin levels,  androgenetic alopecia early age of onset,  cystatin c in serum,  ldl cholesterol,  ldl cholesterol change with statins,  refractive error,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Breast_Mammary_Tissue,  Esophagus_Mucosa,  Muscle_Skeletal,  Testis

Download