rs6050945 chr20:25861820 T>G
- Sequence
atccgggctccagtttgtggcggc[T/G]tgggagaccggaccgtgggtgtct
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) SEM (childhood B acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ERG_HUMAN RAD21_HUMAN ZNF48_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.63 | 0.16 | 1.39 | 1.21 | Weak Discordant | |||
| ERG_HUMAN | 2.90 | n/a | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 2.42 | -1.57 | 1.42 | n/a | n/a | |||
| ZNF48_HUMAN | 2.71 | -2.78 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood