rs6051725 chr20:401915 T>C
- Sequence
agcgttagactactactcacctga[T/C]gatacgtcagaaggagaatcatct
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXK2_HUMAN NFYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.81 | 0.19 | 1.25 | n/a | No Hit | |||
| NFYC_HUMAN | 1.15 | -1.15 | 1.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood