rs6051726 chr20:401983 A>G
- Sequence
catgaagccgtgacaatgtccatg[A/G]ttggatgtcaggagcagatgatgt
- ASB in cell types
- HEK293 (embryonic kidney) Peyer's patch HepG2 (hepatoblastoma)
- ASB for transcription factors
- NFYC_HUMAN KDM1A_HUMAN SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFYC_HUMAN | 1.68 | -1.68 | 1.00 | -3.97 | Concordant | |||
| KDM1A_HUMAN | 2.52 | -0.09 | 1.00 | n/a | n/a | |||
| SIN3A_HUMAN | n/a | 2.05 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood