rs6053740 chr20:5846415 G>A

Sequence
taattagctgctcacatttaatgt[G/A]acttggccgcagtaaacagtcgta
ASB in cell types
iPS-derived dermal fibroblasts 22RV1 (prostate carcinoma)
ASB for transcription factors
RARA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RARA_HUMAN 1.90 0.41 5.5·10-31.00 1.00 -3.29 Concordant
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Motif analysis

RARA_HUMAN Concordant
RARA_HUMAN pic

Genetic associations

GRASP alzheimers disease with psychotic symptoms (alzheimers disease with psychotic symptoms v. alzheimers disease without psychotic symptoms),  aortic root diameter,  hdl cholesterol,  parkinsons disease,  triglycerides,  years of education
GTEx eQTL Colon_Sigmoid

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