rs60835324 chr17:73192719 G>A

Sequence
agaagctctgctcctaagggaaag[G/A]gaagacttcagccacagtttcgca
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) RPMI8226 (Plasma cell myeloma) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
NFIC_HUMAN NCOA6_HUMAN ZN335_HUMAN GABP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NFIC_HUMAN n/a 3.42 1.002.0·10-11 2.00 n/a No Hit
NCOA6_HUMAN n/a 3.68 1.008.0·10-10 2.00 n/a n/a
ZN335_HUMAN n/a 3.04 1.001.2·10-7 2.00 n/a No Hit
GABP1_HUMAN n/a 4.23 1.002.2·10-7 2.00 n/a n/a
TYY1_HUMAN 0.84 2.22 1.004.3·10-7 1.71 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid,  Whole_Blood

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