rs6095727 chr20:49979152 G>A
- Sequence
accccgcgacgattgcagggaggc[G/A]ccttggccagcagagggcgccaga
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GBM39 (Human brain tumor) CD14+ monocytes
- ASB for transcription factors
- MNT_HUMAN LMBL2_HUMAN MAD4_HUMAN MITF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.75 | -1.91 | 1.70 | n/a | No Hit | |||
| LMBL2_HUMAN | 1.30 | n/a | 2.00 | n/a | n/a | |||
| MAD4_HUMAN | 3.31 | -3.30 | 1.00 | n/a | No Hit | |||
| MITF_HUMAN | 3.16 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.50 | 0.49 | 1.75 | n/a | No Hit |
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