rs6103378 chr20:43547683 G>A
- Sequence
ctgcctcatgttggaatgcacaca[G/A]tgtctgcttgtcttgctgttagca
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN ARI4B_HUMAN ZN205_HUMAN ATF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | n/a | 2.43 | 1.50 | n/a | No Hit | |||
| ARI4B_HUMAN | -2.88 | 3.27 | 1.00 | n/a | n/a | |||
| ZN205_HUMAN | -3.38 | 3.23 | 1.00 | n/a | No Hit | |||
| ATF2_HUMAN | -2.16 | 2.55 | 1.00 | n/a | No Hit | |||
| FOXA3_HUMAN | -2.33 | 2.70 | 1.00 | 0.10 | Weak Concordant |
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Motif analysis
