rs6108571 chr20:10429672 A>G

Sequence
tctgcccttttcctcatgctcctc[A/G]tcaactcactcagcacatcctgcc
ASB in cell types
HepG2 (hepatoblastoma) liver
ASB for transcription factors
HLF_HUMAN HNF4A_HUMAN TEAD3_HUMAN HOMEZ_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HLF_HUMAN -2.93 3.28 1.004.5·10-5 1.00 n/a No Hit
HNF4A_HUMAN -0.21 1.86 1.001.2·10-3 1.30 n/a No Hit
TEAD3_HUMAN -2.14 2.54 1.004.7·10-3 1.00 n/a No Hit
HOMEZ_HUMAN -2.19 2.58 1.000.01 1.00 n/a No Hit
ZGPAT_HUMAN -2.84 2.74 1.000.02 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP infant head circumference,  neuroblastoma (brain cancer),  parkinsons disease,  stabilized warfarin dose
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Esophagus_Mucosa,  Nerve_Tibial,  Whole_Blood

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