rs61290587 chr1:1080336 G>A
- Sequence
ccacgtgctgcccaagggccaatc[G/A]cgagtgcgcaggtgggggacgtgg
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) Ishikawa (endometrial adenocarcinoma) renal cortex
- ASB for transcription factors
- USF1_HUMAN RBM25_HUMAN ESR1_HUMAN ZN398_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | n/a | 2.74 | 1.50 | 3.79 | Concordant | |||
| RBM25_HUMAN | -0.60 | 1.91 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.34 | -0.07 | 1.75 | n/a | No Hit | |||
| ZN398_HUMAN | n/a | 1.86 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | -1.66 | 2.18 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood