rs61318917 chr1:39883661 G>A

Sequence
gtgtcagaacctcaactacccgcc[G/A]tctttttttttttttcttcttatt
ASB in cell types
K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
RFX1_HUMAN NFRKB_HUMAN NRF1_HUMAN PKNX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX1_HUMAN -0.85 1.04 1.002.2·10-9 1.00 n/a No Hit
NFRKB_HUMAN n/a 3.27 1.001.1·10-3 1.00 n/a n/a
NRF1_HUMAN -0.99 1.23 1.006.0·10-3 1.44 n/a No Hit
PKNX1_HUMAN -4.34 2.51 1.009.4·10-3 1.50 n/a No Hit
ZN592_HUMAN -2.41 2.72 1.000.01 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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