rs61769890 chr1:16056336 T>A
- Sequence
acacacatcaggccccgcccctct[T/A]cctggctcagaggcgtggtggagt
- ASB in cell types
- RH4 (alveolar rhabdomyosarcoma) HCT-116 (colon carcinoma) renal cortex GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN CREB1_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.73 | 0.03 | 1.12 | n/a | n/a | |||
| CREB1_HUMAN | 2.27 | -2.27 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | -0.22 | 0.37 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid