rs61778872 chr1:77927603 T>A
- Sequence
tgcatgcctctgtgtgtgtgtgtc[T/A]gtgtgtgtgtgtgtgtgtgtgtgt
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
- ASB for transcription factors
- ZSCA4_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSCA4_HUMAN | n/a | 2.80 | 2.00 | 4.53 | Concordant | |||
| IKZF2_HUMAN | -2.43 | 2.32 | 1.00 | n/a | n/a |
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Motif analysis
