rs61801971 chr1:33350098 A>T
- Sequence
gcttagggaggcgggcgccacgcc[A/T]cgaggaggctgccctgatagccgg
- ASB in cell types
- HepG2 (hepatoblastoma) NCI-H2171 (small cell lung carcinoma) HCT-116 (colon carcinoma) P493-6 (B-cell lymphoma)
- ASB for transcription factors
- MAX_HUMAN MYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 1.61 | 0.09 | 1.22 | -2.70 | Concordant | |||
| MYC_HUMAN | 1.99 | -0.24 | 1.00 | -4.10 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood