rs62119731 chr19:39412680 C>T
- Sequence
actctcccgccccagatgtggcgc[C/T]gccgccgtcacacgagccccgtga
- ASB in cell types
- K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) erythroid cells
- ASB for transcription factors
- TF65_HUMAN ANDR_HUMAN RFOX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TF65_HUMAN | 2.28 | 0.21 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.49 | 0.05 | 1.50 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.38 | -4.03 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg