rs62120663 chr19:39436003 A>G

Sequence
agggtctgcgcaggcgccttgagc[A/G]ctgcgtcgcgacgggagagagctt
ASB in cell types
HEK293 (embryonic kidney) K562 (myelogenous leukemia) HepG2 (hepatoblastoma) HL-60 (acute myeloid leukemia)
ASB for transcription factors
RBM25_HUMAN JUN_HUMAN ANDR_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN -0.53 1.89 1.005.7·10-3 2.00 n/a n/a
JUN_HUMAN 0.11 1.45 1.008.4·10-3 1.89 n/a No Hit
ANDR_HUMAN 1.31 -0.47 0.011.00 2.33 n/a No Hit
TYY1_HUMAN -4.75 2.26 1.000.01 3.33 n/a No Hit
STAT1_HUMAN 1.65 n/a 0.021.00 4.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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