rs62123254 chr19:6660558 T>C
- Sequence
tatgctcaatgctgccctaagcct[T/C]atgaggtcaccacggaaccacagg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.36 | 2.97 | 1.00 | 3.11 | Concordant | |||
| STAG1_HUMAN | n/a | 2.74 | 1.00 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
