rs62127956 chr19:49225061 G>A
- Sequence
ccacagtgccacctgcctgacacg[G/A]ccaccaagtacactccttttaaaa
- ASB in cell types
- glioblastoma cells GM12892 (female B-cells lymphoblastoid cell line) HeLa (cervical adenocarcinoma) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.50 | 0.10 | 1.55 | n/a | No Hit | |||
| STAG1_HUMAN | 1.51 | -1.10 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.52 | 0.18 | 1.47 | n/a | n/a |
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