rs62129340 chr19:4343188 T>C
- Sequence
ggacctgagtttctcccctggtcc[T/C]aaaggccgaggcctctgagttcct
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) GM19193 (female B-cells Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN CTCF_HUMAN TBP_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 3.32 | -4.79 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.08 | 2.66 | 1.36 | n/a | No Hit | |||
| TBP_HUMAN | 2.63 | -2.67 | 1.00 | n/a | No Hit | |||
| NRF1_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid