rs62129827 chr19:48255931 C>T

Sequence
cagaggaggtgggctttctgagaa[C/T]tgagggaagtaagctctcaggact
ASB in cell types
A549 (lung carcinoma) HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
ASB for transcription factors
GABPA_HUMAN TYY1_HUMAN ZN341_HUMAN JUN_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABPA_HUMAN 2.28 -0.66 8.7·10-181.00 1.76 n/a No Hit
TYY1_HUMAN 1.78 0.05 1.1·10-71.00 1.50 n/a No Hit
ZN341_HUMAN n/a 3.97 1.009.9·10-6 2.00 n/a No Hit
JUN_HUMAN 1.68 -0.93 1.4·10-41.00 1.06 n/a No Hit
BRD2_HUMAN 1.38 0.11 2.9·10-31.00 1.75 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Minor_Salivary_Gland,  Muscle_Skeletal,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Vagina,  Whole_Blood

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