rs62129862 chr2:10091786 A>C
- Sequence
gtgcccggtcccatcgaccgccca[A/C]gggctgagaagtgcgggcgcacca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN KAISO_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.05 | 2.79 | 1.50 | 1.28 | Weak Concordant | |||
| KAISO_HUMAN | 2.15 | -0.45 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid, Whole_Blood