rs62129863 chr2:10091842 C>T
- Sequence
ctggcaggcagctccacctgcagc[C/T]ctggtgcgacatccactgggtgaa
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN KAISO_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -2.47 | 2.85 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.51 | 3.44 | 1.72 | -0.51 | Weak Discordant | |||
| KAISO_HUMAN | 2.16 | -0.58 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Left_Ventricle, Muscle_Skeletal, Thyroid, Whole_Blood