rs62130291 chr19:48589234 T>C
- Sequence
atttgctgacagactggatgtggg[T/C]gtgagagaaggggatgagtcaagg
- ASB in cell types
- A549 (lung carcinoma) BEAS-2B (bronchial epithelium) HCT-116-RAD21-mAC
- ASB for transcription factors
- GCR_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.61 | 1.50 | 1.00 | n/a | No Hit | |||
| EGR1_HUMAN | 0.12 | 2.09 | 1.00 | 1.32 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Esophagus_Muscularis, Heart_Atrial_Appendage, Skin_Sun_Exposed_Lower_leg, Thyroid