rs62132330 chr19:921447 A>G
- Sequence
aaagaaaatgtggcgcgcgcgcac[A/G]cacacacacacacacacacacaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HT1080 (fibrosarcoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN NRF1_HUMAN SSRP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.24 | 0.27 | 1.26 | n/a | No Hit | |||
| STAG1_HUMAN | 1.92 | -0.03 | 1.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.85 | 2.31 | 2.00 | 0.10 | Weak Concordant | |||
| SSRP1_HUMAN | -4.65 | 3.18 | 1.33 | n/a | n/a |
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Motif analysis
