rs62134737 chr2:46541956 C>T
- Sequence
ggagaatgtggcctccagggggag[C/T]ccaggtacatttgccgggtccgga
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) RWPE2 RWPE1 (prostate epithelial cells) WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.57 | 0.11 | 1.32 | -3.32 | Concordant | |||
| STAG1_HUMAN | 1.28 | -1.28 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood