rs62136101 chr19:46350798 C>T
- Sequence
tcagagtgtgtgagcagcagggcc[C/T]ggatatccccttcctcgccacgtg
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) CD14+ monocytes
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN ETS1_HUMAN FLI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.49 | 0.39 | 1.25 | n/a | No Hit | |||
| STAT1_HUMAN | 2.38 | -0.48 | 2.00 | n/a | No Hit | |||
| ETS1_HUMAN | 2.42 | -2.16 | 1.00 | -4.44 | Concordant | |||
| FLI1_HUMAN | 2.35 | -1.83 | 1.00 | -3.45 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood