rs62137005 chr2:48344277 C>T
- Sequence
aaaccaaatccgttatcgtttgat[C/T]ttttcctttttacagtgttgtgat
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- CDK9_HUMAN GCR_HUMAN KDM1A_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDK9_HUMAN | 2.48 | -0.82 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | 1.15 | 0.71 | 1.15 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.57 | -0.27 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.08 | -0.70 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.33 | -0.37 | 1.80 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Spleen, Testis, Thyroid