rs62143234 chr2:42796520 C>T
- Sequence
gggaattaactcttattataaaca[C/T]tgagtgtcagccctggttcttccg
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.61 | 0.49 | 2.00 | 0.21 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Colon_Transverse, Esophagus_Mucosa, Nerve_Tibial, Pituitary, Prostate, Whole_Blood