rs62144050 chr2:66497930 T>C
- Sequence
ctatttaggcagcactgccaccca[T/C]tgttactctgaagcacacttgcaa
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) GM02610 (Lymphoblastoid Cell Lines) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.44 | 1.95 | 1.29 | 2.05 | Concordant | |||
| STAG1_HUMAN | -1.26 | 1.82 | 1.00 | n/a | n/a |
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Motif analysis
