rs62145261 chr2:87341710 C>T
- Sequence
gctgtaggcaaggctgctgggagc[C/T]aggagccgccgcgctccgcggtag
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.22 | -0.06 | 1.48 | -0.16 | Weak Concordant | |||
| STAG1_HUMAN | 2.57 | -1.63 | 1.13 | n/a | n/a | |||
| RAD21_HUMAN | 1.90 | -0.65 | 1.75 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
