rs62152496 chr2:101151633 C>T
- Sequence
tccaatcctgcgccaggctccctc[C/T]ctcccgcctctccgcgctctcagg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor MOLT-4 (Adult T acute lymphoblastic leukemia) monocyte-derived macrophages from peripheral blood
- ASB for transcription factors
- ELF1_HUMAN ZBT40_HUMAN SPT5H_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -0.10 | 3.48 | 1.17 | n/a | No Hit | |||
| ZBT40_HUMAN | -4.05 | 3.73 | 1.00 | n/a | No Hit | |||
| SPT5H_HUMAN | -1.93 | 1.89 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 3.06 | 2.66 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Muscle_Skeletal, Pancreas, Thyroid