rs62154845 chr2:96601907 G>A
- Sequence
ctcctccccagctgggtcatctat[G/A]ccctatcagtcaatctgaaaggca
- ASB in cell types
- K562 (myelogenous leukemia) liver breast tumor CyT49-derived endodermal cells
- ASB for transcription factors
- ESR1_HUMAN RXRA_HUMAN PDX1_HUMAN PRD10_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.17 | n/a | 2.00 | 2.32 | Discordant | |||
| RXRA_HUMAN | 2.46 | 0.26 | 1.00 | -1.93 | Weak Concordant | |||
| PDX1_HUMAN | -2.66 | 2.57 | 1.00 | n/a | No Hit | |||
| PRD10_HUMAN | 2.71 | -1.91 | 2.00 | n/a | n/a | |||
| SP1_HUMAN | 2.03 | -0.20 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood