rs62157782 chr2:112056315 T>C
- Sequence
tttctctcttcttgagttcctgaa[T/C]ttctctacagttcctgtcacagtt
- ASB in cell types
- CD14+ monocytes CTV-1 (Adult T acute lymphoblastic leukemia) macrophages form periferal blood HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN TF65_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.46 | 0.58 | 1.33 | -1.07 | Weak Concordant | |||
| STAT1_HUMAN | 3.09 | -0.72 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 2.20 | -1.19 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood