rs62158266 chr2:97996336 C>T
- Sequence
cctcttctccggcgcctgggcaat[C/T]ctccgtgctctgtcctacagtggt
- ASB in cell types
- CD14+ monocytes MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.18 | -0.47 | 3.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.19 | 1.59 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas