rs62158853 chr2:113111989 C>T
- Sequence
gacagttttaggcctgaggcaacc[C/T]cagactttgggttgttgtttgctg
- ASB in cell types
- liver HepG2 (hepatoblastoma)
- ASB for transcription factors
- CEBPA_HUMAN SP1_HUMAN RXRA_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | 0.43 | 3.10 | 2.00 | n/a | No Hit | |||
| SP1_HUMAN | -0.22 | 3.13 | 1.50 | n/a | No Hit | |||
| RXRA_HUMAN | 0.08 | 2.72 | 1.50 | 2.30 | Concordant | |||
| HNF4A_HUMAN | -2.09 | 1.61 | 1.50 | 0.28 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood