rs62162753 chr2:85418470 A>C
- Sequence
cccagcctgggccctagaccccta[A/C]gaactacaaatcccagcaggcagt
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) ESO-26 (Gastroesophageal junction adenocarcinoma)
- ASB for transcription factors
- MYC_HUMAN ZN687_HUMAN ZFX_HUMAN MYCN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYC_HUMAN | -0.06 | 1.46 | 1.34 | n/a | No Hit | |||
| ZN687_HUMAN | -2.13 | 2.21 | 1.25 | n/a | n/a | |||
| ZFX_HUMAN | -0.38 | 0.98 | 1.00 | n/a | No Hit | |||
| MYCN_HUMAN | 0.08 | 1.88 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood