rs62167832 chr2:172556018 G>A
- Sequence
agcggcgcagggggccgggctccg[G/A]ctaggagggtgggggccgcgccgg
- ASB in cell types
- breast tumor K562 (myelogenous leukemia) monocytes from periferal blood MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SRBP2_HUMAN ESR1_HUMAN RBM25_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 2.16 | -4.56 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 2.96 | -0.04 | 2.00 | n/a | No Hit | |||
| RBM25_HUMAN | 1.82 | -0.73 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.56 | -0.71 | 1.60 | n/a | No Hit | |||
| PKNX1_HUMAN | -0.16 | 1.13 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Whole_Blood