rs62172799 chr2:174002863 T>C
- Sequence
tgtaggtttatcagctgtaacaga[T/C]accaacccctctggtaggggatgt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MTG16_HUMAN NCOR1_HUMAN NFIC_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG16_HUMAN | n/a | 1.83 | 1.50 | n/a | n/a | |||
| NCOR1_HUMAN | -3.04 | 2.33 | 1.17 | n/a | n/a | |||
| NFIC_HUMAN | -2.32 | 2.63 | 1.00 | n/a | No Hit | |||
| HDAC2_HUMAN | -1.76 | 2.64 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | -1.45 | 1.86 | 1.00 | n/a | n/a |
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Motif analysis
