rs62179979 chr2:62578942 C>T
- Sequence
cccagggactctttcttaactctg[C/T]tcccctttgtgcatgtacatcatc
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN EP300_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.30 | 1.94 | 1.24 | 5.40 | Concordant | |||
| JUN_HUMAN | -0.14 | 1.35 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | -0.07 | 1.56 | 1.53 | n/a | n/a | |||
| RAD21_HUMAN | 0.24 | 1.36 | 1.04 | n/a | n/a | |||
| JUNB_HUMAN | 0.13 | 1.39 | 1.41 | n/a | No Hit |
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Motif analysis
