rs62185663 chr20:10962096 C>A
- Sequence
acggagtcatgccatcaaactgcc[C/A]tttctctttattattatttattgt
- ASB in cell types
- HEK293 (embryonic kidney) breast tumor HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- PRDM6_HUMAN FEZF1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM6_HUMAN | -3.15 | 2.23 | 1.50 | -1.66 | Weak Discordant | |||
| FEZF1_HUMAN | n/a | 2.12 | 2.50 | -4.13 | Discordant | |||
| ESR1_HUMAN | 1.84 | 0.52 | 2.00 | -2.93 | Concordant |
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Motif analysis
