rs62186970 chr2:175919100 T>C
- Sequence
caatatttgattctgaacatcctt[T/C]aaactgcccaaaatgtgtgtgaaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- COT1_HUMAN REQU_HUMAN NR2C1_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.29 | 2.62 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | -0.15 | 2.54 | 1.00 | n/a | n/a | |||
| NR2C1_HUMAN | -0.40 | 2.51 | 1.00 | n/a | No Hit | |||
| ARI1B_HUMAN | -1.37 | 1.63 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Thyroid, Whole_Blood