rs62198801 chr2:185337547 C>T
- Sequence
cactgcttgtttacagccaatgtt[C/T]acctaaggtacaagagctcttcag
- ASB in cell types
- VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -3.81 | 3.31 | 1.83 | 7.21 | Concordant |
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Motif analysis
