rs62204257 chr20:57498976 C>A
- Sequence
ggcactgtaggatgttagcagcga[C/A]cctggcctctaccactagatgcca
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) D54 (H54, Human glioblastoma) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.60 | 1.19 | 1.43 | n/a | No Hit | |||
| STAG1_HUMAN | -0.14 | 0.98 | 1.10 | n/a | n/a | |||
| SMC1A_HUMAN | -0.11 | 1.46 | 1.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Prostate, Spleen, Testis, Thyroid