rs62214332 chr21:45555018 G>A
- Sequence
ggagcacgtccaggttatgcgtgg[G/A]gccgccctgtgcgcgcgcctggag
- ASB in cell types
- K562 (myelogenous leukemia) neural cell transverse colon esophagus squamous epithelium
- ASB for transcription factors
- PF21A_HUMAN HDAC2_HUMAN KDM1A_HUMAN MGAP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PF21A_HUMAN | 2.68 | -2.46 | 1.00 | n/a | n/a | |||
| HDAC2_HUMAN | 3.10 | -2.47 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.65 | -1.44 | 2.00 | n/a | n/a | |||
| MGAP_HUMAN | -2.58 | 2.33 | 5.00 | n/a | No Hit | |||
| SMC3_HUMAN | 1.53 | -1.53 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Nerve_Tibial, Pancreas, Pituitary, Whole_Blood