rs62229372 chr21:36320209 C>T

Sequence
ccatagggctccacagtcgttccg[C/T]cacctcccagtcgggttgcggcgg
ASB in cell types
primary B-CLL cells breast tumor 22RV1 (prostate carcinoma) naive IgD+ B cells
ASB for transcription factors
BRD4_HUMAN ANDR_HUMAN ESR1_HUMAN FOXP1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
BRD4_HUMAN 2.45 0.31 1.3·10-41.00 2.09 n/a n/a
ANDR_HUMAN 2.98 n/a 4.3·10-41.00 2.00 n/a No Hit
ESR1_HUMAN 3.36 -0.51 5.5·10-41.00 2.67 n/a No Hit
FOXP1_HUMAN 3.11 n/a 2.0·10-31.00 2.00 n/a No Hit
BC11B_HUMAN 3.01 n/a 5.1·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

EMBL-EBI diastolic blood pressure,  systolic blood pressure
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid

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