rs62241279 chr3:19947075 A>G
- Sequence
gaaggagcaggcggactggcgatg[A/G]tgggaagtgacgaagtggcgcagt
- ASB in cell types
- HEK293 (embryonic kidney) MDM(monocyte derived macrophages) CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN RAD51_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.26 | 0.25 | 1.25 | -0.28 | Weak Concordant | |||
| STAT1_HUMAN | 3.79 | 0.51 | 1.67 | -2.47 | Concordant | |||
| RAD51_HUMAN | 0.66 | -0.66 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | 2.20 | -4.40 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.74 | 0.20 | 1.62 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood