rs62241280 chr3:19947170 A>G
- Sequence
aagtggctccggcggtgggacttg[A/G]gtgtttgtgttttggttcgtgaag
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes MDM(monocyte derived macrophages) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN SPI1_HUMAN ANDR_HUMAN RAD51_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 3.03 | -0.53 | 1.67 | n/a | No Hit | |||
| SPI1_HUMAN | 1.81 | 0.48 | 1.25 | n/a | No Hit | |||
| ANDR_HUMAN | 2.48 | 0.09 | 1.58 | 0.29 | Weak Discordant | |||
| RAD51_HUMAN | 1.04 | -1.04 | 1.00 | n/a | n/a | |||
| TF65_HUMAN | 2.35 | -0.86 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood