rs62255964 chr3:56557037 A>C
- Sequence
caaacggcacaaacggggcacaaa[A/C]ggggaacaaacggcatacgcaacc
- ASB in cell types
- CD14+ monocytes primary B-CLL cells adult erythroblasts
- ASB for transcription factors
- STAT1_HUMAN HCFC1_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -0.12 | 2.13 | 3.00 | -3.05 | Discordant | |||
| HCFC1_HUMAN | n/a | 2.57 | 3.00 | n/a | n/a | |||
| SPT5H_HUMAN | -1.63 | 2.19 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Vagina, Whole_Blood