rs62262411 chr3:112408444 G>C
- Sequence
aaaacatgcttgtatcagtcattt[G/C]tttagtacttaagataggttttac
- ASB in cell types
- LNCaP (prostate carcinoma) LN95(Prostate adenocarcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN A2NVP9_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.83 | -0.52 | 2.33 | -1.82 | Weak Concordant | |||
| ANDR_HUMAN | 1.15 | -0.12 | 1.91 | n/a | No Hit | |||
| A2NVP9_HUMAN | 2.12 | -0.31 | 1.50 | n/a | n/a | |||
| HXB13_HUMAN | 1.90 | 1.01 | 3.25 | n/a | No Hit |
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Motif analysis
